Julianus Pfeuffer

Results 225 issues of Julianus Pfeuffer

On Linux, we build with the latest three manylinux pythons but test with the latest three miniconda pythons. Does not make sense. And fails.

pyOpenMS
CI

Currently, I find no way to view a table from e.g. an idXML. You can try to fake "Annotate with identifications" but nothing happens.

wontfix
TOPPView

- [ ] Add dependencies to the actual executables. I often catch myself forgetting to rebuild. - [ ] Add macro for Diff tests and add a dependency to FuzzyDiff...

Build System
minor

Windows comes with a preinstalled python.exe that is executable but only prints a warning: `Python konnte nicht gefunden werden. F³hren Sie die Verkn³pfung ohne Argumente aus, um sie ³ber den...

minor

https://github.com/OpenMS/OpenMS/blame/9a45bd1e7dd9be3f9bb073d04c22c5ced79688e5/src/topp/IDFileConverter.cpp#L826 From Discord: ``` Command: "C:/Users/OpenMS_Windows64/bin/Debug/IDFileConverter.exe" "-in" "IDMerger_6_output1.oms" "-out" "IDMerger_6_output2.tmp" "-out_type" "idXML" Directory: C:/Users/OpenMS_Windows64/src/tests/topp "TOPP_IDMerger_6_out1" start time: Sep 06 20:17 Eastern Daylight Time Output: ---------------------------------------------------------- ASSERT failure in QCoreApplication: "there...

As assumed by @hroest in #2427 the simple -2,-1,+1,+2 correction matrix is not enough anymore. Recent Thermo sheets (for 16plex) apparently look like in #6131 where they specify the interaction...

We are using a deprecated Docker plugin, that does not let us whitelist syscall for the hardened runtimes of newer dockers. Since Qt 5.10 the MOCing relies on syscall statx....

major

CometAdapter is never available during configure time. This needs to be adapted to build time. https://github.com/OpenMS/OpenMS/blob/8fccdca8a90229b6c831243bdf29766583c97a6d/src/tests/topp/THIRDPARTY/third_party_tests.cmake#L95

wontfix
Build System
minor
beginner tasks

Since Apple is going to drop OpenGL support we need to do one of the following things: 1) Deprecate 3D View for macOS 1) Translate code to Metal framework 1)...

major
TOPPView

Currently it is: `Documentation available here: $hugeUnreadableLink` [Here in create_cpp_extension.py](https://github.com/OpenMS/OpenMS/blob/develop/src/pyOpenMS/create_cpp_extension.py#L88) Should be rst link syntax. Plus I vote for storing the pxd file and maybe also line for every ResolvedClass....