Julianus Pfeuffer

The problem is that it is not clear what the future schema is supposed to be.. For years it was ReleaseX.Y.Z as tag. Now it has been "nothing" for 3.1.0,...

[switcher.json was also wrong](https://github.com/OpenMS/pyopenms-docs/commit/7b0b40ec8754a9a6bc9990224853314db0434d9b). The new parsing rules will convert the "/" into a hyphen. You will need to rebuild all doc versions to make use of the (now) corrected...

Not sure if we actually do stuff after reboot. I kind of doubt it. I have the feeling that while the installer runs, there might be a lock on some...

You need to check the logs in the workdir printed (/home/fox/quantms/work/48/0b7093c90d9b457996be9ca5cd9966 in the above case) to see what actually went wrong in the msstats step. The nextflow log is often...

Very cool. Thanks for finishing. Yes for the python guys, please try. Maybe the ms_level arg breaks the interface. Try to use as much of the new functionality if it...

Unfortunately OnDiscExperiment was not really designed with a lot of compatibility to existing data structures, so one would need to reimplement area extraction for this as well. To be honest,...

> does this mean the copy constructor is not wrapped? Classes prefixed with _ are the Cpp classes. This means the copy constructor does not even exist in Cpp.

Yes but not exposed via the pxd. https://github.com/OpenMS/OpenMS/pull/7630/files#diff-39d8afc5cb71d47be6f77958fb3e3cb03b4a2332d42de0b345d7ee28e2e800acR10

Yes. probably a merge conflict, that was poorly resolved.

a) we provide more flexibility by allowing callback functions b) IMHO it fits better in MsExperiment c) this version is inherently parallelized d) it traverses the spectrum only once for...