Julianus Pfeuffer

There probably needs to be an extra copy for FileConverter into the TPplugin here: https://github.com/OpenMS/OpenMS/blob/7ffeae56012101ee77a37fb26a7dc7e11b84a26e/cmake/knime_package_support.cmake#L303

Since the imports are inside the function (hopefully only the ones that use specutils classes), python will raise ImportErrors when using that function (only) without specutils installed. However, ideally, you...

If you are hoping for 3.4.1: You never released it. https://pypi.org/project/pyopenms/#history If you are hoping for nightly. We have still not adapted a branching workflow here, so we only support...

Hi! In addition to the interpolation use-cases for dynamically setting output paths e.g. related to a user, I just wanted to chime in and mention a few other use-cases that...

The only remaining issue is binaries for thirdparty I think. We probably need a new subfolder for macOS in THIRDPARTY and change the logic in the builds slightly to account...

Hi! I have not looked into the code and have never used negative mode but did you read the statement about the potential_adducts in the algorithm class? There are quite...

Yes. Or conan + artifactory. But they come with their own complexity and problems. See the issues from my profile against those tools.

 This actually does not only affect IsobaricAnalyzer but the whole library, since everything assumes that this hierarchy exists.

Data can be found here: https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Tutorials/Data/latest/Example_Data/IsobaricLabellingTMT/dataset/

It is Orbitrap Fusion data and we might see results of MultiNotch MS3. https://www.dcbiosciences.com/news/raw-proteomics-data-overview/