Julianus Pfeuffer
Julianus Pfeuffer
Yes, at most filter for peptides. Even this is not strictly needed but will speed up ProteomicsLFQ. Depending on your final FDR cutoff you might sacrifice a little sensitivity by...
You need to do search and replace with regex. Should not be too hard I would think.
Thanks, please provide some example executions with output.
Also for you: we have a strict testing policy for first time contributors at OpenMS. If not at least one platform (i.e., your own) is passing in CI and the...
Running the tests locally is part of the pull request template checklist. Please read it more carefully next time. The problem is that it needlessly distracts from pull requests that...
Your test command line looks very good though :+1:
FileConverter -in input1.mzML -out output.mzML -in input2.mzML Duplicate '-in' argument given. Using the first value: input2.mzML It looks like you are using the last argument (which is good) but you...
FileConverter -in input1.mzML -out output.mzML -in input2.mzML Duplicate '-in' argument given. Using the ~first~ **last** value: input2.mzML ?
Current state (thanks @cbielow for running the tool): [report_v1.0.3_lfqBSA_Downloads.html.zip](https://github.com/OpenMS/OpenMS/files/4371361/report_v1.0.3_lfqBSA_Downloads.html.zip)
We still do not have any consensus on how to avoid the Unassigned IDs for every MS2 scan. With the current state, this PR is out of the question for...