JP Cartailler

ZeroDivisionError when running bamCoverage on bam file, converted from bed

5

Greetings, I'm getting an error trying to run `bamCoverage` on a bam file (converted from bed via `bedToBam` and then sorted/indexed by `samtools`). Tech details below. Any guidance is much...

In short, I'd like to do something like: ``` pagoda.show.pathways(c("GO:0044421"), varinfo, go.env, cell.clustering = hc, margins = c(1,5), show.cell.dendrogram = TRUE, showRowLabels = TRUE, showPC = TRUE) ``` but for...

Anyone have more information about PAGA Tree?

2

I can't seem to find any independent information (paper, repository, docs, nothing at all) that describes PAGA Tree. Is it some special configuration of PAGA? We've having good success with...

For those running Anaconda/conda to manage your environment, fqtools (and htslib) is available in the bioconda channel. Easy to install: `conda install -c bioconda fqtools htslib`

Support for heterozygous/homozygous genotype categories?

2

Greetings, I found BnpC is while testing out infSCITE and think it might help us with deciphering our SCS data. I have an initial question - according to the docs...

Fix for hidden output docs

6

**Issue** * There is an open `` tag in the last working section (`### 4.3`), but no closing tag. * Then section 5 starts. Then, right after `###6.5` starts, there...

Greetings, I installed `grist-desktop-windows-installer-0.2.10-ia32.exe` on Win10. It is the only install on this system. * When I open it up, it was automatically logged in with `[email protected]`. * If I...