jpaganini

Warning while installing with conda

1

Hi, I runned into a warning while installing the tool thru conda. The tool still runs well, but it gives an error message when integrating into a pipeline. Error message...

# character cannot be added to input files name

1

**Incomplete output when file names contain the '#' character. The only output obtained is the outputdataframe.csv.** Example of file names: 30345_1#218_illumina.fasta 30348_2#44_illumina.fasta **When replacing '#' with '_' in the file...

Issue with step 8

4

Hello guys, how r u? I'm having a problem with step08. I get the following error message: ``` ====== starting step08: run fasttree and raxml for tree construction fasttree time-cost:...

Combining PlaScope with gplas

6

I've been testing the combination of PlaScope outputs with gplas (ref: https://doi.org/10.1093/bioinformatics/btaa233) to get individual plasmid reconstructions (instead of just binary classfication of contigs). We got great results for E....

Added the "-g" flag. When using this flag, an additional output, compatible with gplas will be created.