jowodo

a temporary workaround until this is fixed: ``` conda activate phyloflash # or what ever you named your phyloflash environment conda install hmmer cp ${CONDA_PREFIX}/bin/nhmmer ${CONDA_PREFIX}/lib/phyloFlash/barrnap-HGV/binaries/linux/nhmmer ```

This is what I ended up with: ``` VERSION=1.4.1 URL=https://github.com/mattarnoldbio/alphapickle conda create -y --name alphapickle-$VERSION python=3.9.5 conda activate alphapickle-$VERSION mkdir -p ${CONDA_PREFIX}/share pushd ${CONDA_PREFIX}/share git clone --quiet --depth 1 --branch...

@TienMPhan how did you install and what were the exact command to arrive at this error? Maybe a simple `pip3 install jax` might help, if I have to guess.

How is the current version 1.5.4 and the previous 1.4.1? This is a possible way on how to tag old commits: ``` git clone https://github.com/mattarnoldbio/alphapicklecd DeepVirFinder git log --graph --oneline...

Am I right, that `requirements.txt` is used for the command: ``` python3 -m pip install -r ``` and `linux64requirements.txt` is used for the command: ``` conda install -f ``` Are...

Looks like you did not install the database (see https://github.com/jiarong/VirSorter2#download-database-and-dependencies). Has this issue been resolved? If so, please close it.

that would be great!

I noticed that Version 1.0.1 does not include `diff_mustache.py`. That means that my options are now: - create conda environment according to latest master branch commit - create conda environment...

The latest `environment.yaml` is flawed and a lot of packages are interpreted as channels ... https://github.com/ay-lab/mustache/commit/63bc67afcae784701f4502f2929f031ac88a948c?diff=unified lines 5-24 are the problem. When I use the `environment.yaml` file from the master...

This is resolved in pixelfed 1.0.0.75 on iOS 18.2 Can you verify that it works with a newer version @jrossstocholm ? PS: nice meme 🐧