joshuakirsch

Understanding kmer contigs for FASTG Output

2

Hi, Thank you so much for this great tool. I was hoping to use Megahit to build fasta graphs for input to SCRAPP ([https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01068-z]). From reading your tutorial on converting...

Taxonomy.t Tests Fails for Bio::Perl::

1

I am trying to install Bio::Perl on Ubuntu using this command: `sudo cpan install Bio::Perl` The installation seems to fail in both Bio::DB::GenBank and Bio::DB::GenPept due to Taxonomy.t Here are...

Hi, I'm trying to remove erroneous archael hits from my bracken file (calculated at the genus level). The issue I'm having is there a lot of different archael genuses here...