Josh Moore
Josh Moore
Workflow: * Download https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0062A/6001240.zarr * Clone resave.py https://github.com/ome/ome2024-ngff-challenge/pull/3 * `mamba env create -n ex -f environment.yaml` * `./resave.py 6001240.zarr output.zarr` ts_info.py ``` #!/usr/bin/env python import random import numpy as np...
* Download is possible via `aws s3 cp --recursive --endpoint-url=https://uk1s3.embassy.ebi.ac.uk --no-sign-request s3://idr/zarr/v0.4/idr0062A/6001240.zarr/ 6001240.zarr/` * An existing output.zarr is available at https://uk1s3.embassy.ebi.ac.uk/ebi-ngff-challenge-2024/4ffaeed2-fa70-4907-820f-8a96ef683095.zarr ([validator](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/ebi-ngff-challenge-2024/4ffaeed2-fa70-4907-820f-8a96ef683095.zarr)) * But more important (❗) updating to b1...
cc: @martindurant
I'd be interested in thoughts/discussions of how we could include upcoming major changes either in SPEC-0 or in a separate SPEC. https://github.com/numpy/numpy/issues/26191 is certainly a useful tool, but a clear...
@bsipocz: definitely! And I think they're great, but on the spectrum of possible upgrades to watch, that's even more churn than `--pre`, no? ``` ``` Maybe this is almost more...
That may well be the case, and I'm very happy to hold my brainstorming for elsewhere/elsewhen. 😺 I think the issue I'm mulling over is: why didn't more testing take...
> [rgommers](https://github.com/rgommers) commented [15 hours ago](https://github.com/scientific-python/specs/issues/217#issuecomment-2176360472) > Your impression may not be fully correct here. The amount of testing done for numpy 2.0 was enormous. Huge apologies if I sound...
> It'd be good to update SPEC 0 indeed to mention NumPy 2.0 :+1: > then please still use --pre in a CI job :heart: and I will try to...
> [stefanv](https://github.com/stefanv) commented [14 hours ago](https://github.com/scientific-python/specs/issues/217#issuecomment-2179057033) • > it is to have a central location where urgent updates are fed back to community developers :+1: if I can expand on...
@jo-mueller: happy to get you setup with a test server that has reduced connection timeout settings if it'll help. https://omero.readthedocs.io/en/stable/sysadmins/config.html#omero-sessions-timeout e.g. is a place to start, e.g., by setting CONFIG_omero_sessions_timeout=60000...