Joseph W. Brown
Joseph W. Brown
I'm having trouble trouble merging our hardcoded flags with those passed in with configure, so for the moment `CXXFLAGS` is its own thing as you had originally suggested (as of...
You should provide details and a reproducible example if you hope to get this addressed. :bowtie:
@kateuckele Can you provide the input files?
Thanks. I'm not sure exactly what the problem is. Is it that the clade members are not listed in the first clade? What are your expected results?
Hrm. Okay, running it as you did I got the same results as you did, but when I re-ran it with the verbose flag (-v) it seems to generate what...
If this solves things, then perhaps you have 2 different versions of phyx, with each one having a different default value for verbosity. Please try re-running the example files using...
Yikes. Okay. It sounds like v1.3 is broken, almost certainly by me... I will try to get to this soon. Thanks for pointing it out.
Didjya try `treePL`?
@NiuNiuguohao Did you compile it yourself, or did you use conda? If the former, navigate to the `src` directory and confirm that `treePL` was created. If so, you should be...
@LeoEarnest There is only version 1.0. I am afraid I cannot help with conda, but manual compilation/install is easy.