Jose Manuel Duarte
Jose Manuel Duarte
Thanks for creating the issue. I can see the commit that mentions it. Did you mean perhaps to create a pull request?
I don't think there's a pull request yet. You will need to create one from your fork. See [some docs](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request) if you need help.
Could you add a dummy commit to the branch? I'm hoping that will trigger the tests.
I have some reservations about making d-aminoacids behave just as normal aminoacids in biojava. When they appear as part of polymers in the PDB, they appear mostly as short peptides,...
:+1: Sounds like a nice to have and I agree it is basic enough to be in core.
Contact matching based on seqres indices is a way to be able to compare residues in different chains of same entity when their numbering is inconsistent between chains. A good...
Agree @sbliven , I think we should work on making this more general, comparing 2 sets of contacts via an alignment or even in some topologically independent way. This is...
I'm going to try to work on this for the 6.0.0 release. It requires some API breaking changes.
I wouldn't adapt the parser to cope with this... The best solution is catching the exception and producing some good error message.
Sounds good @Shubhangi2901 , we are always happy to get help. FYI there's a secondary structure tutorial: https://github.com/biojava/biojava-tutorial/blob/master/structure/secstruc.md The full implementation and tutorial was done by @lafita