jonas

Hi @elhaam, unfortunately it's very hard to tell what the exact problem is here. However, it seems to stem not from the Pando code itself but from the `Matrix` package....

Hi @TerezaClarence , I'm not fully sure what causes the issue here, are you using a publically PBMC available dataset? If you point me to where you have it from...

Hi @Sandman-1, unfortunately I'm also not fully sure what the cause of your issues is. I'm aware that there are a number of possible pitfalls when adapting the builtin resources...

Yeah that's quite odd, I haven't seen that before... could you maybe give me access to some example dataset where that happens? Could imagine that there is a problem with...

I can try. Here's some code I used to convert JASPAR motifs to what is currently used by Pando, maybe its of use to you: ```opts

`target` should be the right column, if there are no correct gene names in there then I would assume that something went wrong prior to running `infer_grn()`. I would need...

Ah thanks, I think that might be the source of the problem. Have you tried running with `peak_to_gene_method='Signac'`? The option 'GREAT' currently loads a custom version of the human EnsDB...

Yeah that's a known problem. The lm fromulas don't work with feature names starting with numbers. I haven't gotten around to fixing it, but I would suggest to filter these...

Here's another current one I found quite useful for building statistical intuition in a bioinformatics context: [Modern Statistics for Modern Biology](https://www.huber.embl.de/msmb/index.html) As for online courses, although mostly not specifically related...

Hi @sylestiel, we only curated regions for human, so the mouse equivalents are not included. If you download them as bed files then it would be relatively easy to convert...