jorisbalc

Model improvement questions

4

Greetings, This is mostly about how to improve the quality of remora models and a few other questions will be asked below. I have trained a custom modification remora model...

Hi, I'm trying to run a custom mod base model with bonito with the following line: ``` onito basecaller --modified-base-model train_results/model_best.pt [email protected] BC3/ --device cuda:0 --reference /home/v313/ref-seqs/lambdagenomeref.fasta > ahyC_bonito_basecalls.bam ```...

Understanding motif search

8

Hi I'm working with a bacterial genome and I'm trying to figure out secondary specificity of a methyltransferase. I think the `motif search` is the correct tool to use here....

questions regarding raw signal analysis

4

Hi Marcus, I've got a couple of questions regarding the api usage and raw signal analysis. Sorry in advance if some of the questions are super basic as I'm not...