Jordan DeKraker

Yes there are likely duplicate values, but this is valid in my case. All my vertices were generated on one regular meshgrid (and then some vertices were removed, leading to...

Hi Oliver, sorry for the slow response. I don't know of any project to apply HippUnfold to children. I suspect it will work in some cases, but may have a...

Happy to help troubleshoot, but note that these models weren't trained with much disease data and so segmentation may not work super well if there is very high atrophy. Still,...

I don't think your images got attached properly, do you think you could try again please? Make sure to add them on the Git Issue and not by email Thanks

Thanks This definitely looks like a gross oversegmentation, particularly in th eposterior areas. This is a failure at the UNet tissue segmentation step, which we noted occurs a bit more...

yup, that will work! I recommend writing to a new output folder though if that is the same output name you used previously

Thanks for sharing. Performance definitely looks better now using this model, but I agree there are stil quite a few errors. my suggestions would be: 1) manually check the results...

As suggested above, try the T1w images. The T2w images in the ADNI dataset are anisotropic - they have good resolution in a coronal plane but very thick slices and...

Hi, Thanks for the question. I believe all outputs should be identical whether you include `--atlas multihist7` or not (as long as you are useing a recent version). That is,...

you can run `hippunfold --version` to get the currently installed version, but i don't believe this is written in any output log files. It would be nice to add this...