Clement Jonquet

Side-by-side BioPortal/OntoPortal format - SSSOM comparison

4

This is similar to #147 We have started such a process in AgroPortal : https://github.com/agroportal/project-management/issues/265 CC @graybeal

Extend OntoMaton to talk to AgroPortal and SIFR BioPortal

3

This is a feature request to have an extension of OntoMaton be able to talk to : http://bioportal.lirmm.fr/ API at : http://data.bioportal.lirmm.fr/ and AgroPortal http://agroportal.lirmm.fr/ API at : http://data.agroportal.lirmm.fr/ These...

Encode some metadata information related to entities in the ontology metadata

3

Similar to what is suggested in #1140 I would love to see Protégé encode directly within the owl:Ontology metadata the following information (that MOD tries to standardize): Property name |...

Can we encode "New entities metadata" as a metadata of the ontology?

1

I just re-discover the feature of Protégé: Settings>New entities metadata. This is very useful to have this and I will suggest an extension in another issue. This feature request is...

This feature request is about extending the feature of Protégé to add metadata when a new entity is created in the ontology. I would suggest in addition of "creation date"...

Protégé allows to select a date property for new created entities here dc:date is a very fuzzy and unclear metadata property... for something that is quite clear in the UI...

Especially for the repository, bug-database and mailing-list This is for reference in MOD2.0: https://github.com/sifrproject/MOD-Ontology

It seems we have an error when parsing FOBI in AgroPortal using the OWL API ERROR o.s.ncbo.oapiwrapper.OntologyParser - http://purl.obolibrary.org/obo/fobi.owl#FOBI:050339 It seems this Annoation Property is not defined as the other...

### AgrO term http://purl.obolibrary.org/obo/UO_0010048 ### Bug/Typo/Error description https://agroportal.lirmm.fr/ontologies/AGRO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUO_0000039 and https://agroportal.lirmm.fr/ontologies/AGRO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUO_0010048 shared the same label ### Your nano-attribution (ORCID) 0000-0002-2404-1582

### AgrO term http://purl.obolibrary.org/obo/UO_0000006 ### Bug/Typo/Error description We found out that picomole, nanomole and micromole are duplicated as instances of the class "Substance unit" and subclasses of this same class....