Jon Lund Steffensen
Jon Lund Steffensen
Adds properties to `NativeModel` to make it look more like the model representation in psamm-import. Then, copies over code from psamm-import which can now be applied to `NativeModel`.
Add specialized `argparse` type for reaction references. This type guards against using non-existing ID since the actual ID string can only be obtained (through `resolve()`) if the reaction is defined...
It was proposed that additional features should be allowed in the medium table format. Currently the medium table format consists of 4 column (2 required, 2 optional), specifying compound ID,...
Currently the gene associations are interleaved with the reaction database. This makes it hard to use shared reaction databases for different organisms. @keitht547 suggested moving the gene associations from the...
When solving the LP10 problem in Fastcore with GLPK, the objective becomes very small so that GLPK seems to consider it equal to zero. It may be possible to solve...
Adds two functions that check for spurious production and for spurious consumption, respectively. For example, the reactions `A => B + C` and `C => A` allow for a spurious...
## Goal Celery sometimes calls the `failure_handler` with a string for the `traceback` parameter instead of an actual traceback object. This was reported in https://github.com/bugsnag/bugsnag-python/issues/372 (there's a comment on that...