joneson

I have these same problems, and have installed roary in both ways, in a conda roary environment.

I have the same issue. I have just reinstalled prokka and have also insured that hmmer is installed, but get the same error. sudo cpanm Bio::SearchIO::hmmer Bio::SearchIO::hmmer is up to...

Current version of BioPerl is 1.7.8. Are you saying go back and install BioPerl 1.7.2?

Thanks, after doing that and then updating tbl2blasn I am able to run prokka. is it possible that the original hmmer problem is related to this - in the prokka...

To update tbl2blasn I followed instructions in prokka FAQ and README.mb: Why does Prokka keeps on crashing when it gets to the "tbl2asn" stage? It seems that the tbl2asn program...

I have seen this question asked multiple times, but haven't yet seen a response. Did you find a solution to this issue?

I also get the same error, using the provided Ruminococcus dataset on a linux pc. Is there a fix? I will try to figure out npbhavya's rule comment in the...