Jonas Andreas Sibbesen

Hi Martin, The new release is now available ([v1.5](https://github.com/bioinformatics-centre/BayesTyper/releases/tag/v1.5)). It contains a new mode where noise and genotypes are estimated at the same time (`--noise-genotyping`). I would recommend using this...

Hi Songtao, Thank you for posting. The `*` allele is used for nested variation, such as, variants inside an upstream deletion. In your example there is a large homozygote called...

If you use the same seed (option `--random-seed`) the results should be the same between each run.

Strange. Did you use the same seed for each run? Are you able to share the command line you are using?

In order to get the same results each run you need to use the same seed for the pseudo-random number generator. By default, the seed will be set using the...

Hi, thank you for writing. The standard deviation for the fragment length distribution (`--frag-sd`) needs to be above 0. Changing this should resolve the error. Please let me know if...

Hi, thanks for writing. It looks like *Boost* is not installed on your system which is required by *BayesTyper* (https://github.com/bioinformatics-centre/BayesTyper/wiki/Building-BayesTyper-from-source). Are you on a Linux machine? If so you can...

Hi, there are unfortunately no test cases you can use as part of the repository.

Hi, No, *Manta* is not a requirement to run *BayesTyper*. The method is mentioned as part of an example pipeline for predicting candidate variants (using *Manta* and other methods) and...

Hi, thanks for writing. Would you be able to share all the command lines used including the kmer counting and clustering steps.