Jonas Andreas Sibbesen

Thank you for the suggestion. This is a great idea. I unfortunately do not have time to work much on BayesTyper currently, but will keep this in mind for when...

Hi Mo, Thank you for your interest in our tool. BayesTyper does not support translocations and these will therefore always to filtered by `convertAllele`. For the insertions the inserted sequence...

Hi, Sorry for the delayed reply. 1. I would recommend using the SNVs and indels from the samples if possible. These variations are important to correctly match kmers in the...

Hi, Thanks. If you are just interested in summary statistics (type, length, frequency etc.) of the genotyped variants you can use this script: "src/bayesTyperTools/scripts/getSummary.cpp" (binary should be under "bin/scripts" when...

Hi, due to how the genotyping algorithm is designed it will unfortunately not scale well too that many samples. What you could do instead is to combine all predicted variants...

Thank you for mentioning this. I have updated the wiki with an additional bgzip compression step.

Thank you for writing. I am adding @lassemaretty who wrote the Snakemake pipeline. Hopefully he can help.

@Parsoa Thank you for your patience. I have reached out to the author of the Snakemake pipeline again. He is really busy, but hopefully I will hear from him soon.

Hi Youhuang, Thanks for writing. This assert is the result of a bug introduced in v1.4. The latest version (1.4.1) fixed the bug. Let me know if you are still...

Hi Prithika, Thank you for writing. I am currently on paternity leave. Will look into your issue next week, when I am back to work. Best, Jonas