Jonah Pearl

Got it, thank you both! I will update my version to get my desired behavior as a warning for now, which will at least alert me to it. > On...

Yeah, it's the former. @oruebel's suggestion is good in general, but I don't really want to have a separate NWB file for each analysis function in my data! `skip_duplicates=False` I've...

Thank you for your detailed response. This helps me understand the pitfalls of overwriting data in HDMF. > For your particular case, where you just want to update the values...

Ah cool, I’d be happy to try. Do all HDMF containers have a .data attribute? Feels like it would almost be too abstract to just add what I wrote above...

Ah, I see now. I was worried that `seq_trains` was getting stored and re-used, but I see now that it's created each time from the input, so the `has_spikes` bool...

> 1. I havn't found the "There are two options for ops.initialize = ''fromData' or 'no'" options, maybe it is deleted in the latest kilosort version? Hi Alchemist-Y — I...

I guess I mean something similar to what PhantomSpike described above — basically, you can see some spikes by eye and convince yourself that the situation improves after pre-processing.

FWIW, this is now compounding with the removal of `np.bool`, which causes herdingspikes to fail (at least in the SI test run) for numpy versions 1.24 and above. So users...