Josh L. Espinoza

Results 83 comments of Josh L. Espinoza

Did you ever figure this out? I have the same problem except with Python 3.6.2

Do you mean piping the autoencoder or tsne embeddings into dbscan? I just heard about autoencoders earlier in the week and DEC so i'm fairly new at their architecture. >...

Could it be as simple as just replacing the `.apply` method with `.progress_apply` method temporarily in the `with` statement? I have no clue as I've never done that type of...

Since PyMC4 devel started during TensorFlow 1.0 era does that mean the current PyMC4 needs to be rewritten?

emapper v2.1.6 I just ran it on the default settings. Diamond is faster than MMseqs2 right? What do you recommend to get the most hits?

Yea I ended up finding that tool but I think it might be dead b/c it has a lot of errors and hasn't been updated in over a year. Been...

How did you end up installing it? Iirc I installed via bioconda and got an error message when I tried to check the install. > On Aug 26, 2022, at...

I was thinking about this as well! Would this work? http://scikit-learn.org/stable/modules/generated/sklearn.multiclass.OneVsRestClassifier.html ```python model__multiclass = OneVsRestClassifier(LogisticGAM()) model__multiclass # OneVsRestClassifier(estimator=LogisticGAM(callbacks=['deviance', 'diffs', 'accuracy'], # fit_intercept=True, max_iter=100, terms='auto', tol=0.0001, # verbose=False), # n_jobs=1) ```

@dswah I couldn't get it to work: ```python from pygam import LogisticGAM from sklearn.ensemble import OneVsRestClassifier base_estimator = LogisticGAM(n_splines=20) ensemble = OneVsRestClassifier(base_estimator, n_jobs=1) ensemble.fit(X_iris, y_iris) model_selection.cross_val_score(ensemble, X=X_iris, y=y_iris, cv=10) #...

Should this be a default for multiclassification case?