EnrichedHeatmap
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jokergoo
make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
Hi ! Thank you so much for building this package, I have issues with: 1) There are three legend right now in the bottom, i only want to keep the...
hi, I'm trying to plot a heatmap with 2388 rows that I previously plot fine. Now, it seems that enriched heatmaps cuts half of the rows. I am not able...
Hi, I am trying to compare DNA methylation over set of genomic regions through average profile and heatmap. Is there any control to keep the y-axis same for top annotation...
Hi, I got a strange error. Here is my code: `EnrichedHeatmap(mat = mat1,row_split = factor(group_list[rownames(mat1)],levels = c('level1','level2','level3')),use_raster = TRUE,raster_resize_mat = mean,col = col_fun,pos_line = FALSE,row_order = p@row_order,name = '1',width =...
Hello, and thanks for great package. I'm plotting ATAC-data with two replicates / condition. In the past I have just given concatenated GRanges objects with the replicates to NormalizeToMatrix() as...
Hi Zuguang, I made two commits. Please have a look at the explanations below. If I missed something why this is not the case please let me know! The first...
HI, I was trying to plot my enriched heatmap using a normalized matrix. Unfortunately, when I try to plot it, I can see only half of the heatmap plotted. Could...
Hi, Thanks for development of this nice tool. I found no parameter to set strandness in the function "normalizeToMatrix", so I try a test to know whether the strandness of...
Hi, Could you please tell me how to remove failed rows from the matrix ? thanks
