johnstonmj

To expand upon this, when I run a larger human WGS sample I see additional warnings. Do these appear to be related to the cleanup of temporary directories? The program...

Best of luck submitting your thesis, Iñigo! Just documenting now while it is fresh in my mind, but feel free to wait until October. So far, the results seem to...

Hi Iñigo, Hope all is well for you! Regarding point #3 in my previous message, the error `OSError: [Errno 16] Device or resource busy` appears to be caused by NFS...

Hi Inigo, I've done a bit of digging into my failing samples. When I re-run Circlemap-Realign interactively, I get additional warning messages that were not captured in the stdout /...

Hi Inigo, I hope you enjoyed your vacation! I believe I have found another source of `ZeroDivisionError` that leads to this error. I mention the `ZeroDivisionError` in `realignment_probability()` above. I...

Hi Inigo, Regarding the second source of ZeroDivisionError: The function background_freqs() is indirectly used to calculate a division denominator within pssm(). My fix was to edit utils.py such that: ```...

I was already considering making the pull request, but I hadn't found the time. I'll see if I can get to it soon! And yes, just e-mailed you separately. Cheers,...

Hi Iñigo, If you have yet to adjust the directory for temporary files, I just thought that I'd mention that the TMPDIR solution above only redirects some of the temporary...

Thank you for the response! I know it is likely not your main focus right now. Not super urgent, but I would like to use this feature sometime after the...