John Orgera
John Orgera
I have been working on some of the other GATK modules for this hackathon. MarkDuplicates is in progress right now. This issue isn't a huge deal most of the time,...
Hey Ben, I'm still working on this. I'll work on a draft PR but currently I'm encountering a bug when I'm running a lot of samples using the branch. I...
I made the draft PR https://github.com/nextflow-io/nextflow/pull/6647
Yeah I realized the module file was a pre-commit issue. I think pre-commit doesn't play nice with my HPC cluster for some reason but I'll figure that out. I'll work...
> In addition, the modules should really be updated first in nf-core/modules and then secondary in nf-core. All of the GATK versions were bumped in the modules repo a few...
Ah I thought you were referring to the version bump. The prefix issue isn’t a problem for most modules. I’ll be fixing those in the modules repo then np-core module...
Going to close this as it is currently being implemented in another PR
@SPPearce Prettier wasn't run properly, it has been fixed