John Davey

Hi Ryan, Thank you very much for putting together this excellent comparison. Currently you say that most of the errors remaining after methylation-aware nanopolishing are homopolymers. Have you tried nanopolish...

name is not defined in paftools.js gff2bed

6

Thank you for all your excellent work on minimap2, we use it every day. I'm trying to convert the NCBI GRCh38 RefSeq annotation to BED format for aligning with minimap2...

Inconsistent behaviour and unnecessary warning when entrez_link called with single ID and by_id = TRUE

1

Thanks for developing rentrez, it is excellent. The man page for `entrez_link` says when `by_id = TRUE`, a list of `elink` objects will be returned, one for each ID in...

N50 and L50 jargon is confusing

9

### Prerequisites - [ X ] make sure you're are using the latest version by `seqkit version` - [ X ] read the [usage](http://bioinf.shenwei.me/seqkit/usage/) ### Describe your issue Thanks for...

racon removes contig ends with no coverage

32

Hello, I'm using racon to polish a close-to-complete genome assembly where most contigs have telomeres on the end. Racon is removing many of these telomeres. Is there any way I...