John Bradshaw

Thanks for this! I just checked what version of `protobuf` I was likely using at the time (by looking at the Docker images), and it seems 3.14.0, but otherwise I'll...

Hi @yuxuanou623! From your message it seems that the Molecular Transformer server is not running correctly. (As the ground truth products are available during training, this is only used at...

That's good, but seems strange that the serving does not work! What do the server logs say (from where you ran `server.py`) when you run `functional_tests/reaction_predictor_server_checker.py`?

And just to confirm when you were running `translate.py` this was on exactly same machine (same GPU, same CUDA, same Python environment) as when you run `server.py`?

So it's probably worth just double checking that the error really is in the server code (as it seems based on the line numbers from the traceback you shared in...

Thanks for clarifying! Last time I ran the Molecular Transformer I used Python 3.6, `pytorch=0.4.1`, and `cuda92=1.0` (you can see the full environment [here](https://github.com/john-bradshaw/synthesis-dags/blob/master/conda_mtransformer_gpu.yml)), and ran it on a Tesla...

Hey @yuxuanou623! Sorry you're having trouble using my provided environment! It's a little hard for me to be fully sure what's going wrong here without access to your machine. I...

Hi @AustinT, thanks for commenting! I’m not actually too sure whether running the Transformer code with a more recent version of PyTorch will actually work; their code was originally created...