Johannes Werner
Johannes Werner
Hello, thank you for this pleasant tool. Is there a possibility to translate the filenames into something different than the accession numbers? I know there is the human-readable option, but...
Hello, cool package, thank you. :-) Is there a possibility to download all genomes that belong to a certain genus or family? The way I see it, I cannot use...
Is it just in my case, or is the download of entire groups with `meta.retreval` such as ```r meta.retrieval(kingdom = "virus", db = "refseq", type = "genome") ``` very slow?...
Hi, I am trying to run diamond as part of a luigi workflow and need a custom output (#395). Therefore, I am using `subprocess.run()` to run diamond which fails due...
Is there a possibility (preferably a tsv table) that maps the original contig IDs from the assembly on the MAGs and the new contig IDs? The file `./genomes/clustering/old2newID.tsv` has the...
Is it possible to omit gene prediction and run metaerg directly on already predicted genes? How would the input files look like? Thank you very much!
This issue is possibly the same as in #4 but since it has not received any attention, I will open this issue. After fixing my workflow as described in #10,...
### What bug did you encounter? At the scene with the client Stacy and Lucy's, when agreeing to the shorter deadline, the exception as described in additional notes occurs. I...
I am aware that I can use apply_row_masks to add row breaks between layers, however this method also removes duplicated values between columns. How can I add row breaks without...
This is probably not a bug and maybe also documented somewhere, but I could not find any information about it. I built a custom ARB database of a subset of...