Johannes Köster

icon indicating a website link https://koesterlab.github.io

icon company University of Duisburg-Essen icon location Essen, Germany icon location Professor for Bioinformatics and Computational Oncology

Results 62 issues of Johannes Köster

What about a chaining API

2 comment

Hi Adam, what do you think about replacing the current API with a chaining one that allows to omit certain items, e.g. ``` rust cue::pipeline( create_lazy_iterator_with_lots_of_items(), |item| { do_super_duper_expensive_task_which_returns_result(item) }...

Random fails when building within github actions

1 comment

We try to build a container image via cargo wharf. Locally everything works fine. However, in github actions we have failures at random crates (everytime a different one). The errors...

Fix/gnu wget

2 comment

see title ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add" or "Update" appropriately...

fix: auto-inference of run deps downstream of libbigwig

see title ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add" or "Update" appropriately...

fixing run deps of various packages downstream of libdivsufsort

see title ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add" or "Update" appropriately...

fix: infer leehom run deps from run export and add run_export to bamtools

see title ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add" or "Update" appropriately...

Fix/fastx toolkit deps

see title ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add" or "Update" appropriately...

fix: infer libmaus2 run dependency for staden_io_lib from its run export

see title ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add" or "Update" appropriately...

fix: infer bam2fastx run dependency for pbcopper from run export

see title ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add" or "Update" appropriately...

fix: infer leviathan lrez run dep from run export

see title ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add" or "Update" appropriately...