johan-gson

Ok, seems I lost write access to the repo, I sent a message to Ivan, but any changes may be delayed a bit.

ok, thanks, it worked now!

So, I'm not sure I get what you mean fully, but will explain anyway :). Since YeastGEMAdapter inherits ModelAdapter, it will automatically have all the functions that are in ModelAdapter...

The problem is that GECKO light doesn't take the largest kcat, it takes the smallest MW/kcat, so if the enzymes have different MW this may not be right. This is...

I recommend going for ftINIT in that case, although it is much more code.

The ftINIT algorithm available in RAVEN is somewhat well commented in the code. But it is more complex than the previous method, but much faster and also more accurate for...

I also recommend the supplementary note in the preprint. It is not perfect though - the code has changed a bit since and we have not yet updated the preprint....

The test cases for ftINIT in RAVEN should also be useful - mostly automated unit tests

Thank you! Best, Johan

Thanks, will have a look next time we need it! I'm sure many will find this most useful!