João M.C. Teixeira

Results 25 issues of João M.C. Teixeira

Is is possible to make the side bar scrollable, or add a scrollable text inside the side bar? I would like to add an index to the sidebar, but when...

Hi @ionelmc *quick words of introduction:* I have been reading during the last days through your documentation, posts and projects related to this cookiecutter and packaging strategy. In the beginning...

Hello @ionelmc First of all thanks very much for all your effort to assemble this template and the associated blog posts. I am trying your implementations because I am new...

For example: `pdb_rplresname -HIE:HIS -HID:HIS -HSD:HIS -HSE:HIS FILE.pdb` This would avoid looping over and over for several residue name replacements.

enhancement

pdb_wc as library not returning the report. thnk is because writing to std.out

enhancement

Follows discussion on #113 For now, adds two conversion tables between: - BMRB/PDBv3/Amber - Old PDB The input `pdb` atom name format is guessed on the fly, hence there is...

Tool Request

Consider ~HEXADECIMAL~ hybrid-36 for `pdb_fromcif` to allow for more than 10000 atoms. Some programs may read this nomenclature: https://github.com/haddocking/haddock-CSB-tools/blob/master/CAPRI/pdb_tidy.py kudos to @rvhonorato

enhancement

Today I found another curious case for `pdb_delinsertion`. I don't call it a bug but, instead, a case not considered yet. PDB ID: `1MH1` In this `pdb` there are two...

enhancement

Hi, I am not able to get syntax highlight. I must say I am relatively new to vim. I have sourced all your plugin `*.vim` files. Still, when I open...