jnmark
jnmark
Hello, I get the following error while trying to replicate the Nanostring tutorial. I tried installing both the 'dev' version from Github as well as Squidpy 1.2.2. ``` KeyError Traceback...
Hello, I am trying to read in multiomic data from the newly released 10X open source datasets: https://www.10xgenomics.com/resources/datasets/multiomic-integration-neuroscience-application-note-visium-for-ffpe-plus-immunofluorescence-alzheimers-disease-mouse-model-brain-coronal-sections-from-one-hemisphere-over-a-time-course-1-standard This dataset is not included in the sample_ids within sq.datasets.visium. It has...
Trying to do a fresh install of cellpose as per this tutorial video: https://www.youtube.com/watch?v=5qANHWoubZU I tried creating a new conda environment and installing cellpose, however, I get an error: ```...
Hello, I have a question about this tutorial: https://squidpy.readthedocs.io/en/latest/notebooks/examples/plotting/plot_segment.html. In this tutorial, you have plotted fibroblast and epithelial clusters at once on two FOVs: But when these are plotted without...
Hi, first of all, great package! Have been using the animate function pretty extensively. :) I had a question about adjusting colors in `sm.hl.animate` - I would like to use...