Jessica Vera, Ph.D.

@edward130603 is `spatialEnhance` expecting `imagecol` to be the image pixel column? I'm having the same issue described here and it's not clear to me what is needed for this function...

I think something has changed on KEGG's end such that older versions of clusterprofiler are not accurately pulling data from KEGG, that's my best guess any way cuz I'm re-running...

@joyduck I too identified `dbIndexCol` and `rnktype` as issues preventing use of the mm10 rankings and modified accordingly to set to `motifs`. I also modified `motifAnnotName` to incorporate "v9" for...

@ShaoZhiting24 I modified `dbIndexCol` several times in`ScenicOptions.R` You can view the changes in the following commits: and then when I run `initializeScenic` I set `dbIndexCol = "motifs"`