Joseph LaVigne
Joseph LaVigne
Here is the code that I am trying, but I keep hitting a wall: `modkit localise 240222_barcode10_as_12MAR2025.bam.gz --regions 4:19031768-19033832 --genome-sizes Danio_rerio.GRCz11.dna.primary_assembly.tsv -o 240222_barcode10_LOCALISE_21MAR2025.tsv` And here is the error message that...
HI @ArtRand, thank you again! I was able to construct a modkit localise product file.
Hi @ArtRand, I successfully created the file I wanted, and now I'm trying to add _--chart_ to generate a visual. I receive error messages over and over when I input...
@ArtRand thank you again and I appreciate your explanations!
Hi @ArtRand another question came up recently related to this: Does the region.bed in the modkit localise input align with the transcriptional start site with the origin of the x-axis...
Hi @ArtRand, just a couple follow up questions: 1.) so if my region.bed is `4 19031768 19033832` are you saying that the "0" on the x-axis will be the **midpoint**...