José Manuel

Reproducibility issues in Seurat.

18

Dear Seurat team, Recently, our team has encountered significant reproducibility challenges while using Seurat. When applying the same code to identical datasets on different devices, we observe substantial variations in...

Application blurring issues under Mutter + triple buffering (and asking for plans to blur more panel elements).

1

Hi, I have been using successfully the extension for the whole shell, including the experimental "Application blur" for the gnome-terminal window with great results. My system config is: OS: Fedora...

Overview blur stopped working.

2

Overview blur has just stopped working in Fedora 40 using GNOME 46. It has happened just after a general MESA and AMD VA drivers update, so could be related. I...

I cannot reopen the docker desktop app after closing it similarly to Issue #14242 on the desktop for windows repo. I am running docker desktop 4.39 on Fedora 41. As...

Hello, I am using RDP classifier with a custom classifier and I get this error: Exception in thread "main" java.lang.OutOfMemoryError: Java heap space at edu.msu.cme.rdp.classifier.Classifier.(Classifier.java:47) at edu.msu.cme.rdp.classifier.TrainingInfo.createClassifier(TrainingInfo.java:144) at edu.msu.cme.rdp.classifier.utils.ClassifierFactory.createClassifier(ClassifierFactory.java:197) at...

vcftools bug interrupts execution under --joint_germline

1

### Description of the bug Hello there! I just came to notice that the vcftools TsTv counts step breaks the execution of the pipeline with the C error messages I...

Hi, stat_pvalue_manuel do not respect the facets of the plot and draws all pvalues from the different facets on top of each other.  Here's the code: `stat.by.group % group_by(group,...