jmerkin

samtools sort fails when using too many tmp files

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Hello. Samtools sort fails when trying to merge a large number of files. It produces the following error: [bam_sort_core] merging from 1197 files... [E::hts_open_format] fail to open file './samtools.78234.635.tmp.1021.bam' The...

Hi everyone. As always, thanks for the great tools. I have some split-seq data (from Parse Bio) that ran through the Parse Bio pipeline already (1 moving part at a...