John Chilton
John Chilton
- https://github.com/workflowhub-eu/galaxy2cwl - https://github.com/workflowhub-eu/galaxy2cwl/blob/master/examples/simple_workflow_cwl-interface.cwl
Implement complex composite uploads - implement dicts with ``type:``, ``location:``, and ``path:``. Currently just simple list like in tool XML. https://github.com/galaxyproject/planemo/pull/900/files#r235869818.
- [ ] Certain parameters types require default values, these should be validated. - [ ] Check test data files exist. - [ ] Check tests test something (`raise Exception(...
- Some basic typing. - Reduce dependency on app objects. - Remove unused method. - Remove unused re-export to tool shed for code only used in Galaxy. - Remove export...
More cleanup along the lines of https://github.com/galaxyproject/galaxy/pull/14662 - this time replacing repository abstraction used by test from the database model to the pydantic model fetched from the API. The result...
- Builds on RO Crate Export - Task-based and a similar API should make it easier to integrate into #14606 - Adds validation previously missing using data model generation approach...
- Code quality things - typing and test cases. - Fix so that it only copies for sim_size and diff - for file comparisons using regular expressions or contains do...
Adds an admin only API entry point for reindexing search in order to enable testing of search. Some fixes for the tool search API also. Builds on #14553. ## How...
Fix abstraction in test workflow populator - we are returning jobs unrelated to the workflow invocation by using history_jobs. Noticed in test cases for https://github.com/galaxyproject/galaxy/pull/14073. ## How to test the...
The Goals: - Replace direct database access with pydantic typed API requests. - Replace Twill with playwright. - Eliminate access to the Galaxy UI in the tests - the tests...