Joel Lüthi
Joel Lüthi
I've been installing SimpleElastix locally in a virtual environment on my Mac (macOS 10.15.4) and ran into an edge-case when SimpleITK was already installed in my virtual environment. In that...
## 🐛 Bug Assigning unique colors to labels via label_layer.color dictionary does not work as expected and shows the color of some objects in other objects as well. I color-code...
Context: We were discussing OME-NGFF usages recently with @tischi and I noticed we were going in somewhat separate directions on this topic. I’d like to start the broader discussion to...
I would like to suggest a change to the wording of the OME-NGFF HCS plate specification and add some recommendations about performance for visualization vs. structure of image pyramids per...
We are looking to save multiplexing data (⇒ multiple cycles of acquisitions for the same plate) to HCS OME-Zarr files. Reading in the OME-NGFF spec, [plates have the acquisitions key]([https://ngff.openmicroscopy.org/latest/#plate-md](https://ngff.openmicroscopy.org/latest/#plate-md))....
I have an application using pyimagej for image processing and want to make a very simple interface for the users to provide some inputs. I am using tkinter for this...
### 🐛 Bug Report In the context of working on our [feature classifier plugin](https://github.com/fractal-napari-plugins-collection/napari-feature-classifier), I ran into an issue with the speed of updating the color of a single label...
Addresses https://github.com/ome/ome-zarr-py/issues/240, see there for a description of the issue This PR adds a second code path to the `get_pyramid_lazy` function. Its goal is to load the metadata of each...
Currently, the plate loading assumes all wells have the same dimensions in zyx and fails in different ways when this is not the case. For example, if the wells have...
Hey scimap team (@ajitjohnson) Very nice package that you've built here! As part of the review for the JOSS paper, I looked into the tests for the package a bit....