Josipa Lipovac

reads headers empty in fasta file

3

Hi, I'm trying to simulate metagenome reads (including chimeric reads) using pre-trained model and I succeeded in it but I got fasta file of simulated aligned reads with reads that...

Reference file to big to build hash table

1

Hi! I'm trying to use DRAGMAP for mapping to bacteria database from kraken2 to compare the results I've got with minimap2 and bwa mem2. Database fna file has around 110GB....

Partition - Segmentation fault

2

Hi @chhylp123, I tried to run the latest hifiasm version (0.19.8-r603) with data that I was running (successfully) with before. There is only one difference, UL reads are rebasecalled using...