Joseph Lee

Hi @luispedro , Thanks for this very useful package! I have a similar question on the magnitude of ZMs at higher degrees. At high degrees, the moments seem to blow...

Yeah, it seems more likely to happen when `n` is large and `l` is small: https://github.com/luispedro/mahotas/blob/1c84c258c1e4167d4e6864abb3d399703894464d/mahotas/features/zernike.py#L97 which is when the factorials become large: https://github.com/luispedro/mahotas/blob/1c84c258c1e4167d4e6864abb3d399703894464d/mahotas/features/_zernike.cpp#L60-L64 But even then for `n=50, l=0`...

BAM file usage implemented using `GenomicAlignments` package with `readGAlignments` and `summarizeJunctions` functions. Future work to be done includes reading/extracting only the reads that are needed to infer junction usage instead...

Hi @GuangyaoL, What version of `proActiv` are you running? `calculatePromoterReadCounts` has been deprecated in the current version of `proActiv`. Please see the workflow for the latest version [here](https://goekelab.github.io/proActiv/articles/proActiv.html), which runs...

Hi, we deprecated the function because it required quite a number of packages to work, and we were trimming dependencies for our package. You can download `v1.1.18` of the package...

Hi @elenichri, Sorry for the delay - Let me get back to you in awhile. Joseph

This is an error associated with `DESeq2`'s `estimateSizeFactors` function. Please refer to the discussion [here](https://www.biostars.org/p/440379).