jkbaumohl

The GFF3 Validator fails phase determination for the CDS for a trans-spliced gene

1

If you take Arabidopsis thaliana GFF from RefSeq. ``` ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/Arabidopsis_thaliana/reference/GCF_000001735.3_TAIR10/GCF_000001735.3_TAIR10_genomic.gff.gz ``` When you run the tool you get the following error: ``` GenomeTools error: CDS feature on line 483064 in...

Duplicate mRNA line is accepted (should be an error)

7

This seems very problematic that an exact duplicate mRNA line is not seen as a en error. See attached. [Duplicate_mRNA.txt](https://github.com/genometools/genometools/files/232485/Duplicate_mRNA.txt)

The Column order is alphabetical

5

Most DBAs tend to set up there columns in the order they want to see them in queries or views. I would suggest having 2 options on column order, 1...

The Graphing only graphs the current page of results

2

The Graphing only graphs the current page (10 rows) of results. The graphing should graph all the rows. Most tables have more than 10 rows, as it stands now this...