Jasper
Jasper
The problem is that docker then uses the /export/ location which then needs root privileges. The galaxy user which I assume starts galaxy does not have these privileges and therefor...
Thanks for the update! It would be great when there is a solution for 80% of the cases and will look forward to the update on the region issue. I...
I have a first draft working but I was curious if there is a trade-off between the number of contigs or the total size (besides the terminal command length limit)....
Due to the command length limitations I can do a limit by contig size (default 10M?) or when it reaches a certain number of contigs (100?, then you reach around...
First draft is available at https://git.wur.nl/unlock/scripts/-/blob/master/medaka/medaka.py not many options from the individual tools are available but the key ones are.
I used a SEED fasta file and turned it into a blast database and while running it seems to look ok but after a while it encounters an error... ```...
The following command was used: `ncbi-blast-2.11.0+/bin/makeblastdb -dbtype prot -in seed_subsystems_db.fa -title SEED_subsystems`
> GH Actions is showing some linter errors. I think running `make format` should fix the code locally, then you can review if it modified only the files you modified,...
Ah I was already wondering why it was detecting sequences as in DNA / Sequencing data...
In addition, I also noticed it stops after the first requirement check that fails. When fixing that and you run it again it will give a new error of a...