JJ Gao

strange behavior for gene validator

7

try PAQR10:  

Dong et al. Proteogenomic characterization identifies clinically relevant subgroups of intrahepatic cholangiocarcinoma. Cancer cell. 2022

1

https://www.cell.com/cancer-cell/fulltext/S1535-6108(21)00659-0 - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist to the issue tracker - [ ] List information...

Umeda et al. Integrated genomic analysis identifies UBTF tandem duplications as a recurrent lesion in pediatric acute myeloid leukemia. BCD 2022

1

Please keep this checklist for curation of a new study. - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist...

Extended genomics data for MSK IMPACT

2

Currently, for MSK IMPACT, we have mutations, CNAs and fusions/SVs, but we have many additional types of derived data generated by CMO. - Mutational signatures - HLA types - HLA...

Shain et al. The genetic evolution of metastatic uveal melanoma. Nat Genet 2019.

3

https://www.nature.com/articles/s41588-019-0440-9 - [ ] [create a issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist to the issue tracker - [ ] List information...

Pauline et al. Whole genome sequencing of metastatic colorectal cancer reveals prior treatment effects and specific metastasis features. Nat Comm 2021

2

https://www.nature.com/articles/s41467-020-20887-6 - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist to the issue tracker - [ ] List information...

create gene panels for RPPA

3

We should add gene panels for RPPA data.

TRACERx Renal dataset

4

Three papers on the TRACERx Renal dataset: - https://www.cell.com/cell/fulltext/S0092-8674(18)30389-1 - https://www.cell.com/cell/fulltext/S0092-8674(18)30375-1 - https://www.cell.com/cell/fulltext/S0092-8674(18)30164-8 Maybe we only need to curate one dataset for these three studies: `ccrcc_tracerx_2018`? - [ ] [create...

Comparison: https://groups.google.com/g/cbioportal/c/LUX31GWOAeY/m/K2Bk8yU1BAAJ Mutex: Fisher's exact test Co-expression:... Plots:...

Add link to view a group or intersection in comparison view.