Jim Hester

I can see how this may be useful. Unfortunately due to the way that covr works internally this isn't really easily done so I don't feel the added value would...

The problem is more related to how covr tracks coverage. In order to track coverage it needs to instrument the code and add tracing calls, this is done by instrumenting...

@allisonhorst made it, unfortunately I am not sure if the raw images are anywhere but my slack account, which is likely defunct now. Maybe Allison still has them?

I just updated the source code for the read_dna C functions, which should hopefully fix this error in 2c0e129b93862fdc2bd9abc6bc13eafe752e3321. Please install that version from github using ``` r devtools::install_github("jimhester/primerTree") ```...

Sure, use a CUSTOM_DB parameter with the GI numbers you want to search. You should be able to get all the GIs you need from a taxonomy search like http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=7777&lvl=3&lin=f&keep=1&srchmode=1&unlock...

I think the issue is custom_db is only an option when you select custom from the dropdown on http://www.ncbi.nlm.nih.gov/tools/primer-blast/. You may be better off running the query manually then parsing...

Mainly the only change needed here would be to pass `...` to the `custalo()` call in https://github.com/jimhester/primerTree/blob/018e066ee33fd71e0a39a0045c19c2dec9c0a8d0/R/filterResults.R#L39

One issue with the code search is GitHub only includes the first 1000 repositories in its results. I tried running some sample queries with [google's bigquery dataset](https://cloud.google.com/bigquery/public-data/github) but the results...

I don't recall exactly what I had in mind for this feature, but your idea sounds cool!

+1 for using it for sorting. Being able to do a binary rather than linear search could theoretically speed up all the comparison tests as well (although perhaps allocating the...