jiang53peng

> I have the same problem, pfx="ALL.chr" sfx=".phase3_integrated.20130502.genotypes" > > for chr in {{1..22},X}; do $imp5Converter_PATH --h $WORK37/$pfx$chr$sfx.bcf --o $WORK37/$pfx$chr$sfx.**imp5** --r $chr done > > When I add the imp5,...

> I realized this is legacy code from version 1.1.5 of IMPUTE5. With the newer 1.2.0 version the `imp5Converter` bianry should be replaced by the `xcftools` binary and the code...