jhylwq123

I followed the tutorial https://xuranw.github.io/MuSiC/articles/MuSiC.html and I am very interested in the simulated immune cell proportion in kidney. However, the immune cell proportions was all 0. By the way, is...

Coverage difference between bamdst and gatk DepthOfCoverage

1

Does bamdst remove duplicates reads automatically? I first used the "time picard MarkDuplicates REMOVE_DUPLICATES=true" function and calculate the coverage using "gatk DepthOfCoverage" based on removed duplicated bam file. The I...

HLAassoc

3

Thank u for creating this amazing tool! I have two questions. 1. How does HLA-TAPAS deal with the multiallele situation in logistic regression model(HLA alleles，two field)? 2. If I impute...

Thanks for this awesome package! It seems that SKAT did not provide the burden beta for a gene, but some articles reported burden beta using SKAT. Do we need any...

Analyze organ crosstalk using cellhint

1

Dear developers Thanks for posting this amazing tool and providing the open resources of multi-organ reference map in https://www.celltypist.org/organs. My question is if I want to analyze the cell-cell communications...

Hi, thanks for developing such a wonderful tool! I noticed that you kindly provide the "SCENT_interactive.Rmd" to generate results on small sets of gene-peak associations. I am wondering if the...