Jialu Hu

python 3.6 tensorflow 1.7.0 When I install desc and do import desc It gives me the following errors: ImportError: cannot import name 'stacked_violin' I guess it caused by incompatible scanpy...

sc.pl.heatmap cannot show different colors for more than 20 cell types

6

I plot heatmap for normalized gene expression for 34 clusters. The code is as below: sc.pl.heatmap(adata, marker_genes, use_raw=False, swap_axes=True, show=False, show_gene_labels=True, save=ofile, groupby='louvain', dendrogram=True) However, there are only 20 colors...