Jon Haitz Legarreta Gorroño

Can include/exclude regex patterns be handled?

1

I am wondering whether regex patterns that have both include/exclude parts are correctly handled. I would like to be able to mark all files whose path matches a pattern with...

Avoid creating labels when the labeler matches patterns in the config file

3

The `labeler` action creates the corresponding labels in `GitHub` if not already created when matches are found. Although this might mean less work is needed to create labels, it also...

The existing tests should be improved: - ITK testing conventions on the naming of the test files should be applied. - The ITK testing macros should be used (e.g. `TRY_EXPECT_NO_EXCEPTION`,...

Clean up the non-local means denoising modules

2

## Description The `denoise` module contains two modules named `nlmeans` vs `non_local_means` whose meaning is exactly the same. The `nlmeans.py` module has a [commented deprecation warning](https://github.com/dipy/dipy/blob/master/dipy/denoise/nlmeans.py#L7). Some time should be...

DOC: Improve the CLI documentation rendering

8

## Description The positional arguments in the CLI documentation are not rendered in such a way that facilitates the reading; contrary to the optional argument list, where the argument name,...

## Description When the command line interface arguments are parsed, all output parameters, which are identified using the `out_` prefix: https://github.com/dipy/dipy/blob/master/dipy/workflows/multi_io.py#L193 are assumed to correspond to either the output directory...

I am trying to use `cmake_format` together with `pre-commit` and a GitHub Actions workdflow to check the format of some `CMake` code in the following repository: https://github.com/SlicerDMRI/SlicerDMRI I have checked...

Report coverage diffs in PRs or dashboard builds

1

### Description Code coverage reached a peak value around 90.11% around early Oct, 2023. Later that month, coverage dropped to 89.39% from one day to another, and it stabilized around...

`itkFEMElement2DC0LinearQuadrilateralStressTestFEMObjectReader` has hard-coded I/O filenames

1

### Description The `itkFEMElement2DC0LinearQuadrilateralStressTestFEMObjectReader` test in the `FEM` module has hard-coded I/O filenames. Additionally, it is not listed in the `FEM` module's test directory `CMakeLists.txt` file, so even if the...

Improve ApplyScriptToRemotes.sh script's robustness

3

### Description The [ApplyScriptToRemotes](https://github.com/InsightSoftwareConsortium/ITK/blob/master/Utilities/Maintenance/ApplyScriptToRemotes.sh) script applies a script to all remote modules whose build status reports a successful build. There are a number of aspects -many of them were already...