jgonzalez10

Hi! Yes it does. I have the .pbi index file in the same directory as the input .bam file.

Hi, "does your reference also have an .fai index associuated with it?" Yes, it does. "Can you try to run pbvalidate on your aligned bam?" I did, I'm getting the...

We used blasr. However I think pbbamify is a good idea. I do not see it as part of the SMRT tools I have installed. Should it be there? Or...

Ok so I ran pbbamify on my .bam file, it seems to solve the DS error but now I'm getting this new error, any idea what this can be? It's...

Yes, they match this one: Sequel® Sequencing Plate Silwet Mapping SequencingChemistry>S/P2-C2/5.0100-862-200101-309-5005.0

Sorry, I don't understand what you mean. Could you please elaborate it more?

Thank you anyway! :)