Jamie Burgess

icon company University of Liverpool & Aintree University Hospital icon location UK icon location Jamie Burgess is a full-time PhD student using morphometric MRI and DTI approaches to identify brain neurodegeneration in patients with diabetes.

Results 2 comments of Jamie Burgess

3d plots - Tract appearing outside of glass brain

Hi @smeisler thank you for your prompt response. I aligned the data to MNI space using the following commands: for subject in `cat subList.txt`; do cd /Users/Downloads/TractSeg-master/build/scripts-3.8/calc_FA -i Diffusion.nii.gz -o...

3d plots - Tract appearing outside of glass brain

Hi @wasserth I've made sure I am using the latest docker container. Using the following command: /usr/local/bin/docker run -v ${pathData}:/data -t tractseg_container1:latest plot_tractometry_results -i /data/subjects.txt -o /data/tractometry_result.png --mc --alpha 0.05...