James A. Fellows Yates
James A. Fellows Yates
> Hey @jfy133 ! Thanks for your reply. I checked testing it locally and it fails as well, looking into the logs, I see that indeed the conda environment did...
This also occurs on 2.4.1, so this is not new
@nf-core-bot fix linting
> I think, the input parameters style relates to the [discussion on slack](https://nfcore.slack.com/archives/CJRH30T6V/p1665567652242099), so having an extensive configuration via `ext.args` might be preferred to the multiple inputs. Otherwise the module...
> I must admit, I'm confused which style is preferred. I think, all of the following inputs could be dropped in favor of using `task.ext.args`: > > ```nextflow > val...
I would argue we can merge this in, unless you strongly disagree about the `val` channels @Midnighter ?
GitHub Actions: https://github.com/ivotron/zenodo/
> Hi @jfy133 , would you have time to replicate this singularity issue? Will look in the next 30m or so
Can confirm singularity looks OK to me when running locally (no errors), but this might be related from the GHA test: ``` "test_hapibd:HAPIBD": hapibd: [0.001s][warning][os,container] Duplicate cpuset controllers detected. Picking...
Yeha, same again: ``` E yaml.parser.ParserError: while parsing a block mapping E in "", line 2, column 5: Warning: E hapibd: [0.001s][warning][os,con ... E ^ E expected , but found...